Engineering at Oak-Tree

Links, articles, books, and resources

Resources

Articles and Insights

Understanding the big picture and how things fit together. Now, next, and beyond: trends in business, AI, and technology.

Lab Notes

Software development blog: sharing tools, techniques, concepts, and codes.

Code Server

Oak-Tree GitLab instance and code server

Tools and Libraries

Components, patterns, libraries, and architectures used for Oak-Tree projects.

Big Data Development

Oak-Tree Big Data development environment: Jupyter, MinIO, Kafka, and ZooKeeper.

Sonador

Sonador is an open source platform for AI powered applications which use medical imaging data.

Reference

What Is Data Science?

Revealing the insights within data that impacts our lives.

Models of Machine Learning

Data touches every aspect of our lives. Machine learning enables us to teach computers to understand and make use of the insight that they provide.

First Steps with PyTorch

PyTorch is a library that allows for deep learning models to be expressed in concise Python code. This article will introduce PyTorch and show how it can be used to consume pre-trained models for image classification.

How to put active learning to work for your enterprise

What is involved in choosing the right machine learning strategy, locating data, labeling, and assessing model accuracy?

State of AI and Machine Learning

The number of organizations using artificial intelligence and machine learning has skyrocketed. This guide explores some of the challenges in adopting AI and data driven decision making for an organization, and provides a look at how some groups have successfully integrated AI into their broader initiatives.

Essential Guide to Training Data

It's common knowledge that every machine learning solution needs a good algorithm powering it. But to make machine learning and AI work, you need data. In this guide, machine learning agency Figure 8 covers many of the finer points needed about finding and enriching training data to ensure that machine learning projects are successful.

Blockchain

Blockchain is hyped as one of the most transformative technologies in recent history. What is it? Why is it important? What kinds of problems can be solved using blockchain technologies?

Hyperledger Fabric

Hyperledger Fabric is becoming one of the most popular blockchain frameworks used by enterprises and medium-sized companies. What does it take to get started developing with it?

AI in Medical Imaging: Improving Diagnosis and Care

The promise of medical AI is a future where "the wisdom contained in the decisions made by nearly all clinicians and outcomes of billions of patients should inform the care of each patient." How do we get there?

What Is DICOM?

Overview of the DICOM standard and the role that it plays in the Sonador Data Platform.

Digital Imaging and Communications in Medicine

Technology standards used by healthcare organizations, biomedical device, and pharmaceutical companies for medical imaging and data management.

Detecting Lung Cancer with Artificial Intelligence (Part 1): Technical Challenges

Lung cancer is one of the world's most deadly and costly cancers. Early detection and treatment can reduce mortality rates and costs, but reliably spotting tumors in their early stages is a difficult challenge because such nodules are easy to overlook. AI systems for early detection could save millions of lives.

Detecting Lung Cancer with Artificial Intelligence (Part 2): Pathways to Solutions

Lung cancer remains the leading cause of death amongst cancers worldwide because it is difficult to detect. What impact would it have on patients, providers, and the healthcare system if it could be found and treated earlier?

Detecting Lung Cancer with Artificial Intelligence (Part 3): Sonador Lung AI

Sonador Lung AI is an initiative to create a solution for the early detection of lung cancer. It seeks to enable identification of lung nodules at an early stage, measure their progression to guide treatment, and provide integration with clinical systems to help manage care.

Sonador Medical Data Platform

Open-source cloud platform for medical imaging visualization and research. Project overview, technical aims, and links.

Quick Start

Be up and running with the Sonador Development environment in five minutes.

Documentation

Requirements, architecture, and technical reference for the Sonador project.

Examples and Tutorials

Jupyter notebooks and code samples showing how to work with data stored in Sonador.

IO: Architecture and Components

Sonador IO is the data management interface of Sonador used to securely store medical images so that they can be queried, retrieved, and transferred. It provides a streamlined way to share medical imaging data with other institutions across the Internet or other applications within the hospital.

AI: Architecture and Components

Sonador AI provides an end-to-end suite of tools and best practice guidance for Medical Imaging based machine learning. It includes a framework for implementing machine learning models on top of PyTorch, tools for creating annotated datasets, tracking experiments and model versions, deploying to production, and integrating AI into clinical workflows.

Security Overview

How are OpenID connect and oAuth2 used in Sonador to manage authentication of users and authorization of requests?

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